BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB006F08LP1|AL425569
(650 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1420 1050 0.0
>3x_Contig1420
Length = 8324
Score = 1050 bits (526), Expect = 0.0
Identities = 604/636 (94%), Gaps = 1/636 (0%)
Strand = Plus / Plus
Query: 1 ctgtttcactgctgtttcaccgtatttcttacctgttgtttcttaatcagtcagtaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4402 ctgtttcactgctgtttcaccgtatttcttacctgttgtttcttaatcagtcagtaccaa 4461
Query: 61 ccttttcgaagtaaattatggtcaaaagaaataattagttcattgttaactatatggctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4462 ccttttcgaagtaaattatggtcaaaagaaataattagttcattgttaactatatggctc 4521
Query: 121 tttcgtttgaaccaatggtatttaaatgaaaagttctattactctgataaagttcgggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4522 tttcgtttgaaccaatggtatttaaatgaaaagttctattactctgataaagttcgggaa 4581
Query: 181 ctgtcattacgtttcttaaacaagactactaaatcgacatttgtaaaaatacttgaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4582 ctgtcattacgtttcttaaacaagactactaaatcgacatttgtaaaaatacttgaaact 4641
Query: 241 gtaaagcccttactgcggaaactcttgttacaacttagaattatttgawaccactacctg 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4642 gtaaagcccttactgcggaaactcttgttacaacttagaattatttgaaaccactacctg 4701
Query: 301 akcgtcagtaccgacattttgtatagkagtttacagggtttcgggactatttcaaaattt 360
| |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 4702 atcgtcagtacctacattttgtatagtagtttacagggtttcggtactatttcaaaattt 4761
Query: 361 tccatcaaaaattaagaaatcttgacccttttttattctcttgacacaattttttttwag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4762 tccatcaaaaattaagaaatcttgacccttttttattctcttgacacaattttttttaag 4821
Query: 421 tagggttatatcaaattacgaaggaaaagagcgtgagagggcaatgtgccttaggttctt 480
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 4822 taggtttatatcaaattacgaaggaaaagagcgttagagggcattgtgccttaggttctt 4881
Query: 481 gaaatgcagcgatcaccatgaatatatattacgcatatkggtttggaggacgacgagggc 540
|||||||||| ||||||||||||||||||||||||||| ||||| |||||||| || |
Sbjct: 4882 gaaatgcagctatcaccatgaatatatattacgcatatttgtttgtaggacgactagttc 4941
Query: 541 gatgatagcgccannaanagngngnnttcgggacnaanngcaaaavttaattagttgcct 600
|| ||||||||| || || | | |||||||| || |||||| ||||||||||||||
Sbjct: 4942 tattatagcgccattaatagtgtgttttcgggactaattgcaaaa-ttaattagttgcct 5000
Query: 601 gtgccttttctaaatttccaccaacatattktattc 636
|||||||||||||| ||||||||||||| | |||||
Sbjct: 5001 gtgccttttctaaagttccaccaacatagtgtattc 5036
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5086
Number of Sequences: 1807
Number of extensions: 5086
Number of successful extensions: 101
Number of sequences better than 1.0e-20: 1
length of query: 650
length of database: 10,358,551
effective HSP length: 16
effective length of query: 634
effective length of database: 10,329,639
effective search space: 6548991126
effective search space used: 6548991126
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.5 bits)
S2: 50 (100.3 bits)